中国工业微生物菌种保藏管理中心
中国工业微生物菌种保藏管理中心
CHINA CENTER OF INDUSTRIAL CULTURE COLLECTION
Special Services
Chinese Pharmacopoeia Strain Identification

The 2020 edition of the Chinese Pharmacopoeia is gradually in line with the international level, and has revised and supplemented the contents of microbial strain management, strain verification, strain typing, strain traceability, microbial monitoring in the production process, and environmental microbial monitoring, etc., which puts forward new requirements and challenges for Chinese pharmaceutical enterprises in microbial monitoring and management.According to customers' needs, CICC provides technical services to pharmaceutical enterprises in the control of microorganisms in the production process, as well as the detection of new drug application and production strains.

Item Number Item name Workdays Item Number Item name Workdays
CICC-Identi Species level identification 15-25 CICC-FSeq2 18S rDNA 7
CICC-Iso Separation and purification 15 CICC-WGS Whole Genome Sequencing 30
CICC-Spuri Strain purity 15 CICC-PFGE pulsed field gel electrophoresis 25
CICC-SEM scanning electron microscope 25 CICC-RiboTyp Ribotyping Ribosome typing 25
CICC-TEM Transmission Electron Microscope 25 CICC-RAPD RAPD 15
CICC-Phage Bacteriophage 25 CICC-RepP Rep-PCR 15
CICC-BIOM physiology and biochemistry 25 CICC-EricP Eric-PCR 15
CICC-Serum serological test 20 CICC-BoxP Box-PCR 15
CICC-MALDI Rapid identification by MALDI-TOF mass spectrometry 5 CICC-ARDRATyp ARDRA enzyme digestion 20
CICC-SStab Genetic Stability 30 CICC-Pc Plasmid Restriction Endonuclease 25-30
CICC-PStab Production stability 30 CICC-Ppuri Plasmid purity 15
CICC-GStab Gene stability 30 CICC-Pquanti Plasmid Copy Number 25-30
CICC-BSus Bacterial drug sensitivity (AGAR diffusion /MIC /Etest)  15 CICC-Pratio Ratio of Bacteria with/without Plasmid 20
CICC-YSus Yeast drug sensitivity (MIC method /Etest) 15 CICC-Ppro Plasmid yield 20
CICC-FSus Microfilamentous fungal susceptibility (MIC method) 15 CICC-PLrate Plasmid loss rate 20-30
CICC-Virulence Strain virulence 60 CICC-DDH DNA-DNA hybridization 20
CICC-CW Cell Wall Chemical Components (DAP/ Sugar) 15 CICC-GC (G+C) mol% (Tm method /HPLC method) 15
CICC-MIDI fatty acid 15 CICC-TPIdenti Objective Identification of products 20
CICC-MetaC Metabolite content 20 CICC-TPExpre Objective the amount of product expression 20
CICC-Count      Microbial Enumeration 15 CICC-GeneEF Gene expression level and functional activity 20
CICC-Ccount Miscellaneous bacteria inspection 20 CICC-Generesi Exogenous DNA remains 15
CICC-Toxin Mycotoxin assay 25 CICC-Proresi Protein residue 15
CICC-DValue Biological indicator tolerance test 30 CICC-StrainS Established the seed batch system 15
CICC-BSeq  16S rDNA 7 CICC-StrainP Exclusive preservation of strains 15
CICC-YSeq  26S rDNA D1/D2 area 7 CICC-SIC Seal integrity verification 20
CICC-FSeq1  5.8S rDNA IT Sarea 20      


Identification and Safety Evaluation of Food Cultures

In 2018, the National Health Commission of the People's Republic of China issued the "National Standard for Food Safety Strains for Food (Draft for Comments within the industry)", which is the first national standard specification for strains for food in China.Food culture refers to "one or more living microorganisms (including bacteria, fungi and yeasts) that can be used in food by fermentation culture, isolation, drying or not drying."According to the use, it is divided into direct edible bacteria and food fermentation bacteria." Companies "shall use strains that have been identified as safe after safety evaluation to ensure that they do not cause any acute, subacute, chronic or other potential hazards to human health." In the same year, the "Hygienic Standards for the Production of strains for Food Use (Draft for Comments)" issued by the company made more detailed provisions on the requirements of strains for food use: "The original strains purchased by the company or the strains separated and collected by itself should be identified and genetic stability test."

CICC summarized the relevant services for the identification of strains for food with new resources, and CICC will better serve the government supervision and industry needs, and escort the declaration of strains for food enterprises.

Excerpts from the regulations Category Item name Workdays Description
Hygienic Standards for the Production of Strains for Food Use (Draft for Comment)
7.3 Strains for food use
7.3.1 Strains permitted by relevant national regulations shall be used.
7.3.2 For purchased original strains or self-isolated and self-collected strains, strain identification and genetic stability test should be conducted.
Polyphase Identification Bacteria Identification 15 Provide reports on taxonomic status and physiological and biochemical characteristics of strains
Fungal identification 20
Yeast identification 15
Molecular biology identification 16s rDNA sequence analysis 7 Provide reports on strain taxonomic status and molecular biology.
ITS rDNA sequence analysis 10
26s rDNA sequence analysis 7
rapid identification MALDI-TOF MS 3 Rapid taxonomic report of strains
Strain typing tracing pulsed field gel electrophoresis(PFGE) 25 The genotyping results of the tested strains at the plant level are reported with reference strains of specific target strains
Ribosome typing (Riboprinter) 15
Random Amplified Polymorphic DNA Typing(RAPD) 25
Multi-gene sequence Locus Analysis (MLST) 15
Whole Genome Sequencing(WGS) 60
Hygienic Standards for the Production of Strains for Food Use (Draft for Comment)
7.3 Strains for food use
7.3.2 For purchased original strains or self-isolated and self-collected strains, strain identification and genetic stability test should be conducted.
"Food Safety National Standard for Food strains (Draft for Comments within the industry)"
3.1.1 Strains
Bacteria that have been confirmed as safe after safety evaluation should be used to ensure that they do not cause any acute, subacute, chronic or other potential hazards to human health
Safety assessment Genetic Stability 30 Strain safety evaluation report
Antimicrobe Susceptibility 15
Fungi/Yeast Antimicrobe Susceptibility 20
Strain virulence 60
hemolytic 15
Whole genome sequencing (drug resistance and virulence gene analysis; Pathogenicity analysis) 60
toxin detection 15


Identification of Cultures for New Feed/Feed Additives

The regulations on feed and feed additives in China are constantly being upgraded, refined and standardized. According to "Regulations on the Administration of Feed and Feed Additives (revised in 2017)", developers or production companies must submit an approval application to the agricultural administrative department of the State Council before commencing production of new feeds and feed additives. They are also required to provide samples of the new feed or feed additive, as well as information such as name, main ingredients, physical and chemical properties, developing methods, production processes, quality standards, testing methods, inspection reports, stability test reports, environmental impact reports, and pollution prevention measures.


The "Administrative Measures of New Feeds and New Feed Additives (revised in 2016)" stipulate that application materials for new feeds and new feed additives include identification reports of the effective constituents, physicochemical properties, and chemical structure of the effective constituent, or taxonomic (strain) identification reports of animal, plant or microorganism. For microbial fermentation products, reports identifying the strains used in production should also be provided.


In addition, both the "Requirements on Application Materials for New Feed Additives" and the "Requirements on Application Materials for Registration of Imported Feeds and Feed Additives" state that safety assessments of production strains should be conducted for microorganisms and their fermented products, except for strains generally recognized as safe. The revised "Requirements for Application Materials of New Feed Additives" (Announcement No. 226 of the Ministry of Agriculture and Rural Affairs) was officially implemented on December 4th, 2019. The announcement explicitly states that reports identifying the microbial strains used in microbial feed additives and the production of feed additives at least to the level of species or subspecies shall be provided. For feed microbial additives and microbial strains used in the production of feed additives, safety of the strain shall be evaluated. Through microbial phenotypic test, molecular biology test and whole genome sequence (WGS) analysis, combined with relevant literatures,to evaluate the pathogenicity and toxic metabolite production ability of the strains to be evaluated (for feed additives produced through microbial fermentation, the toxic metabolites produced by production strains shall be measured) and antimicrobial resistance was comprehensively evaluated.


CICC is willing to actively cooperate with feed companies, providing assistance in the application of microbial strains for new feeds/feed additives, and committed to offering professional, efficient, and enthusiastic services to enterprises in the feed industry.

Excerpts from the regulations Category Items Workdays Remarks
Administrative Measures of New Feeds and New Feed Additives (revised in 2016)
Article 7, Item 3:“identification reports of the effective constituents, physicochemical properties, and chemical structure of the effective constituent, or taxonomic (strain) identification reports of animal, plant or microorganism. For microbial fermentation products, reports identifying the strains used in production should also be provided.“
Requirements for Application Materials of New Feed Additives (Announcement No. 226 of the Ministry of Agriculture and Rural Affairs)
“Reports identifying the microbial strains used in microbial feed additives and the production of feed additives at least to the level of species or subspecies shall be provided.”
Polyphasic taxonomic identification Bacterial identification 15 Provides report on the taxonomic status and physiological and biochemical characteristics of the strain.
Fungal identification 20
Yeast identification 20
Molecular identification 16s rDNA sequence analysis 7 Provide reports on strain taxonomic status and molecular biology.
ITS rDNA sequence analysis 7
26s rDNA sequence analysis 7
Rapid identification MALDI-TOF MS 5 Rapid strain taxonomy report
Requirements on Application Materials for New Feed Additives
“For feed microbial additives and microbial strains used in the production of feed additives, safety of the strain shall be evaluated. Through microbial phenotypic test, molecular biology test and whole genome sequence (WGS) analysis, combined with relevant literatures,to evaluate the pathogenicity and toxic metabolite production ability of the strains to be evaluated (for feed additives produced through microbial fermentation, the toxic metabolites produced by production strains shall be measured) and antimicrobial resistance was comprehensively evaluated.”
Requirements on Application Materials for Registration of Imported Feeds and Feed Additives
“Strain safety assessments report:
Safety assessments of production strains should be conducted for microorganisms and their fermented products, except for strains generally recognized as safe.”
Strain typing Pulsed field gel electrophoresis, PFGE 25 Using a specific target strain as a reference strain, provide a genotyping result report at the strain level for the strains submitted for inspection.
Riboprinter 15-40
Randomly amplified polymorphic, RAPD 25
Multilocus sequence typing, MLST 15
Whole genome sequence, WGS 30-60
Safety assessment Genetic stability 30 Strain safety assessment report. “Animal pathogenicity tests” refers to strain virulence tests, and “toxin production test” refers to toxin detection.
Antimicrobial susceptibility of bacteria 15
Antimicrobial susceptibility of yeast/fungi 20
Strain virulence 60
Hemolytic 15
Whole genome sequencing (antimicrobial resistance, virulence gene analysis; pathogenicity analysis) 60
Toxin testing 15
Residue of strains in fermented products
30
Antibacterial activity 25


Identification and Safety Evaluation of Probiotics

Probiotics are live microorganisms which when administered in adequate amounts confer a health benefit on the host. The health-care functions of probiotics are strain-specific, and sufficient amounts need to be consumed to achieve the expected health-care effects.

The “Declaration and Review of Probiotic Health Food (Draft)” released in 2019 requires applicants to provide “research reports with functional effects at the strain level” and “strain identification report (includes phenotypic characterization and strain-level identification results based on genotyping)”. At the same time, it is stipulated that “the number of viable bacteria of each type in probiotic health foods shall not be less than 106 CFU/mL(g) during its shelf life”, and “the biological, genetic and functional characteristics of the strains used should be clear and stable, the strains and their metabolites must be non-toxic and harmless”. In the same year, the “Pathogenicity Assessment Procedure of Strains for Health Food (Draft)” was issued and stipulates that enterprises must “provide standardized and scientific taxonomy information (genus, species, strain name or number)”. Bacterial species identification data should include “information based on phenotypes or the latest gene sequencing technology to accurately identify microorganisms to the species level” and the assessment results of “animal pathogenicity tests” and “toxin production tests”. The “Toxicological Assessment Procedure of Health Food and Its Raw Materials (Draft)” stipulates that “health foods with special regulations for probiotics, fungi, etc., should add corresponding tests according to regulations, such as bacterial pathogenicity tests”.

In May 2019, both the Chinese Institute of Food Science and Technology and the Chinese Nutrition Society issued a scientific consensus on probiotics, emphasizing that the number of viable bacteria and strain specificity should be the key characteristics of probiotics.

CICC is a professional probiotic identification and safety assessment service organization. In June 2019, the China Center of Industrial Culture Collection (CICC) successfully passed the “Special Food Verification and Evaluation Technical Institution Registration” of the State Administration for Market Regulation (formerly the China Food and Drug Administration), which marks that CICC has obtained the national statutory license to provide strain identification and strain virulence testing for health food companies and issue third-party testing reports, the registration number is TY06211652. CICC will better serve government supervision and industry needs and promote the healthy development of the health food industry.

Excerpts from regulatory provisions Category Service item weekdays Note
“Declaration and Review of Probiotic Health Food (Draft)”
Article 4 (5)Bacteria identification report(includes phenotypic characterization and strain-level identification results based on genotyping).
“Pathogenicity Assessment Procedure of Strains for Health Food (Draft)”
Article 3
3.2 Bacterial taxonomic information
Provide standardized and scientific taxonomy of the strains to be evaluated issued by an inspection agency with qualifications for strain identification (genus, species, strain name or number) information.
3.3 Bacteria identification data
Based on the current knowledge, provide accurate identification to species-level information based on phenotype or the latest gene sequencing technology
Polyphasic identification Bacterial identification 15 Provide reports on taxonomic status and physiological and biochemical characteristics of strains
Fungi identification 20
Yeast identification 15
Molecular biology identification 16S rDNA sequence analysis 7 Only strain taxonomic reports are provided. Cannot provide "type classification identification report".
ITS rDNA sequence analysis 10
26S rDNA sequence analysis 7
Rapid identification MALDI-TOF MS 3 Rapid strain taxonomy report
Bacterial strain typing and traceability Pulsed field gel electrophoresis, PFGE 25 Using a specific target strain as a reference strain, provide a genotyping result report at the strain level for the strains submitted for inspection.
Riboprinter 15
Randomly amplified polymorphic, RAPD 25
Multilocus sequence typing, MLST 15
Whole genome sequence, WGS 60
“Declaration and Review of Probiotic Health Food (Draft) ”
Article 4
(6)Safety assessment reports such as pathogenicity tests and antimicrobial resistance tests of bacterial strains
“Pathogenicity Assessment Procedure of Strains for Health Food (Draft)”
Article 4
4.2 Whole genome sequencing, WGS
4.3 Animal pathogenicity testing
4.4 Toxin production experiment
“Toxicological Assessment Procedure of Health Food and Its Raw Materials (Draft)”
5.5.4 For health foods with special regulations on probiotics, fungi, etc., corresponding tests should be added as required, such as bacterial pathogenicity tests
Safety assessment Genetic stability 30 Strain safety assessment report. “Animal pathogenicity tests” refers to strain virulence tests, and “toxin production test” refers to toxin detection.
Antimicrobial susceptibility of bacteria 15
Antimicrobial susceptibility of yeast/fungi 20
Strain virulence 60
Hemolytic 15
Whole genome sequencing (antimicrobial resistance, virulence gene analysis; pathogenicity analysis) 60
Toxin detection 15


Identification and Safety Evaluation of GMMs

China's "14th Five-Year Plan" for the development of bioeconomy proposes to develop synthetic biology technology and realize the iterative upgrading of the food industry. Making every effort to tackle tough problems in life and health, biological breeding, basic raw materials, etc., and accelerating breakthroughs in key core technologies is the key to fundamentally changing the pattern of core technologies in key fields in China being controlled by others. At present, the safety evaluation regulations of genetically modified microorganisms at home and abroad are gradually improving and refining, which is of important guiding significance for the declaration of synthetic biology raw materials for enterprises. The Administrative Measures for the Safety Evaluation of Agricultural Genetically Modified Organisms (2022 Revision) stipulates that the safety evaluation of genetically modified microorganisms for animals should include the taxonomic status, safety evaluation, genetic stability, plasmid status, plasmid stability and potential danger of the recipient microorganisms; The safety evaluation of gene manipulation should include the nucleotide sequence and derived amino acid sequence of the target gene, the copy number of the inserted sequence, the physical map of the target gene and the vector, and the name and source of the vector. In addition, the General Office of the Ministry of Agriculture issued the "Guidelines for the Safety Evaluation of Genetically Modified Microorganisms for Animals", which stipulates that "genetically modified microorganisms for feed refer to functional proteins or peptides (such as phytase, antimicrobial peptides, etc.) expressed in bacteria, viruses, mammalian cells, yeast and other systems as feed additives." Genetically modified microorganism (GMM) products can be purified proteins, live GMM or inactivated GMM. The overall evaluation requirements should include: molecular characteristics, genetic stability, biological characteristics of genetically modified microorganisms, safety of genetically modified microorganisms to animals, humans, and the ecological environment. According to customer needs, CICC provides overall solutions for the preservation, identification, research and development and safety evaluation of genetically modified microorganisms and their products, helping enterprises complete product compliance declarations and escorting the safety of genetically modified microorganisms.

No.

Item Number 

Detection Object

Detection Item

workdays 

1

CICC-BIdenti

Genetically modified microorganisms

Bacterial Identification

15

2

CICC-FIdenti

Fungi Identification

20

3

CICC-YIdenti

Yeast Identification

25

4

CICC-BAp

Bacterial Animal Pathogenicity

60

5

CICC-FAp

Fungi Animal Pathogenicity

60

6

CICC-YAp

Yeast Animal Pathogenicity

60

7

CICC-Bsus

Bacterial Antimicrobial Susceptibility

25

8

CICC-Fsus

Fungi/Yeast Antimicrobial Susceptibility

25

9

CICC-BWGS

Bacterial Complete Genome Sequencing

30

10

CICC-FWGS

Fungal/Yeast High-Quality Genome Sequencing

70

11

CICC-Rg

Bacterial Antibiotic Resistance Genes Analysis

30

12

CICC-Vg

Bacterial Virulence Genes Analysis

30

13

CICC-Sstab

Bacterial/Fungi/Yeast Genetic Stability (Recipient Strain)

30-60

14

CICC-Tgns

Target Gene Sequence(Passage 0 and Passage n)

30

15

CICC-Tgns

Target Gene Sequence

25

16

CICC-Pquanti

Plasmid Copy Number

30

17

CICC-Ps

Plasmid Sequencing

25

18

CICC-AEP

The Allergenicity of Foreign Protein of
Genetically Modified Microorganisms Bioinformatics Analyses

30

19

CICC-AEA

The Toxicity and Anti-nutritional Effect Analyses of
Foreign Protein of Genetically Modified Microorganisms

30

20

CICC-Psds

Genetically modified microorganism products

Production Strain DNA Residue

60

21

CICC-Psr

Production Strain Residue

30


Novel Microbial Species Identification

The publication of novel microbial species has a profound impact on the research of microbial systematics. More than 800 papers reporting novel taxa were published on International Journal of Systemic and Evolutionary Microbiology (IJSEM) in 2017, of which more than 300 papers were published by Chinese authors, accounting for about 40%. Since 2018, IJSEM has required authors to provide the whole genome sequencing (WGS) information when publishing taxonomic descriptions. CICC has rich experience in novel microbial species identification service and provides "one-stop" technical solutions, including type strain introduction, strain identification and analysis, public preservation, technical consultation, etc. The testing items have passed ISO 17025 laboratory accreditation, the test results are internationally recognized, and the data reliability is guaranteed. We have served our clients by publishing over a hundred papers reporting novel species on IJSEM.

Item number Item name weekdays Description
CICC-SEM Scanning electron microscope 25 Observation of morphological features (morphology, surface)
CICC-TEM Transmission electron microscope 25 Observation of morphological features (internal ,accessory structures)
CICC-BIOMN Physiology and biochemistry 25 Physiological and biochemical characteristic test
CICC-BIOLOG BIOLOG 25 Identification system based on carbon source metabolism
CICC-API API 15 API identification strips
CICC-Bsus Antimicrobial susceptibility of bacteria 15 Agar diffusion method /MIC method /Etest
CICC-Ysus Antimicrobial susceptibility of yeast 15 MIC method /Etest
CICC-Fsus Antimicrobial susceptibility of filamentous fungi 15 MIC method
CICC-Cloneseq Clone sequencing 15 Bacteria, yeast, filamentous fungi
CICC-GC1 (G+C)mol% 15 Tm value method
CICC-GC2 (G+C)mol% 15 HPLC method
CICC-Fmor DNA-DNA hybridization 20 DNA homology determination of strains genome
CICC-Lipid Fatty acid 15 MIDI Sherlock identification system
CICC-Quin Ubiquinone/Methylnaphthoquinone 15 Bacteria TLC+HPLC method
CICC-Plipid Polar lipid 15 Bacteria TLC method
CICC-CWS Cell wall component (sugar) 15 Bacteria TLC method
CICC-CWA Cell wall component (amino acid) 15 Bacteria TLC/HPLC method
CICC-preservel Strain preservation 1 10 Obtain CICC strain number


Development and Validation of Alternative Methods for Microbiological Testing

With the rapid evolution of modern biotechnology, the emergence of novel microbial testing methods has become a hallmark. These methods offer advantages such as rapid simplicity, high sensitivity, and efficiency, driving the need for validation and standardization. Recognizing this, international organizations like ISO and AOAC, along with national government bodies, have issued standards and guidelines (refer to Table 1). As the industry moves towards these innovative methods, the importance of validation cannot be overstated. Validation studies for alternative methods are systematic, professional, and interdisciplinary. However, in China, there is currently a dearth of publicly available cases applying relevant standards for method validation, highlighting a critical gap that needs attention. The CICC research team, with our extensive experience in industrial microbial detection, preservation of standard strains, and a robust technology development and validation system, stands at the forefront of addressing this need. Our ongoing efforts have yielded promising results, demonstrating the potential of alternative methods in microbial testing. To further catalyze the integration of these technologies into the industry, CICC is extending comprehensive services to developers and users of alternative microbial testing methods. This includes technical services, commissioned research and development, and collaborative projects encompassing solution design, research implementation, statistical analysis, research reports, research papers, and industry expert reviews. We welcome inquiries and look forward to collaborating on the future of microbial testing.


Contact Persons: Yuan Yuan Ge; Xiao Ying Jiang


Phone: 010-53218303/15010084337; 010-53218302


Email: lucy@china-cicc.org; tech@china-cicc.org.


Table 1: Main Reference Standards for the Validation of Alternative Microbial Testing Methods in Different Fields, Domestic and International

Items Reference Standards Qualitative Analysis Quantitative Analysis
Validation of Microbiological Testing Methods for Food ISO 16140 Microbiology of food chain-Method Validation
 Part 2 Protocol for the validation of alternative (proprietary) methods against a reference method
Sensitivity, RLOD, Inclusivity and Exclusivity Relative trueness, Accuracy, LOQ, Inclusivity and Exclusivity
AOAC INTERNATIONAL Methods Committee Guidelines for Validation of Qualitative and Quantitative Food Method comparison-Inclusivity and Exclusivity; CS- Significant Difference, Sensitivity, Specificity, False Negative, False Positive Method comparison-Inclusivity and Exclusivity; CS - Analysis of Variance, Repeatability, Reproducibility, RSD
Validation of Alternative Microbiological Testing Methods for Pharmaceuticals/Cosmetics Guidelines for the Validation of Alternative Microbiological Testing Methods for Pharmaceuticals in the Chinese Pharmacopoeia (2015 Edition), section 9201 Specificity, Detection Limit, robustness, Reproducibility Accuracy, Precision, Specificity, Limit of quantification, Linearity, Range, Robustness, Reproducibility
USP <1223> Validation of alternative microbiological methods Specificity, Limit of detection, Repeatability, Robustness, Repeatability, Equivalency Accuracy, Precision, Specificity, Limit of detection, Limit of quantification, Linearity, Range, Robustness, Repeatability, Repeatability, Equivalency


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